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accession-icon GSE25639
A mouse model of deregulation of the malt1 oncogene recapitulates the pathogenesis of human malt lymphoma
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 10 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Expression of MALT1 oncogene in hematopoietic stem/progenitor cells recapitulates the pathogenesis of human lymphoma in mice.

Sample Metadata Fields

Specimen part, Disease

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accession-icon GSE19836
A mouse Embryonic Stem Cell Bank for inducible overexpression of human chromosome 21 genes
  • organism-icon Mus musculus
  • sample-icon 32 Downloadable Samples
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Description

The HSA21-mES Cell Bank includes, in triplicate clones, thirty-two murine orthologs of HSA21 genes, which can be overexpressed in an inducible manner using the Tet-off system integrated in the Rosa26 locus.

Publication Title

A mouse embryonic stem cell bank for inducible overexpression of human chromosome 21 genes.

Sample Metadata Fields

Specimen part

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accession-icon GSE38200
Ikaros target genes in the mouse pre-B cell line B3
  • organism-icon Mus musculus
  • sample-icon 19 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Genome-wide identification of Ikaros targets elucidates its contribution to mouse B-cell lineage specification and pre-B-cell differentiation.

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE38110
Gene expression in mouse pre-B cells transduced with Ikaros.
  • organism-icon Mus musculus
  • sample-icon 13 Downloadable Samples
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Description

Ikaros family DNA binding proteins are critical regulators of B cell development. To identify Ikaros-regulated genes in pre-B cells we performed gene expression studies at enhanced temporal resolution.

Publication Title

Genome-wide identification of Ikaros targets elucidates its contribution to mouse B-cell lineage specification and pre-B-cell differentiation.

Sample Metadata Fields

Specimen part, Cell line

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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