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refine.bio helps you build ready-to-use datasets with normalized transcriptome data from all of the world’s genetic databases.
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accession-icon GSE25029
Ionizing radiation in GI tract of Tweak KO mice
  • organism-icon Mus musculus
  • sample-icon 54 Downloadable Samples
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Description

TWEAK/Fn14 signaling may regulate the expression of genes involved in epithelial repair and mucosal inflammation. Comparing the gene signatures in WT and TWEAK KO mice will inform the biology of TWEAK/Fn14 pathway in the GI tract.

Publication Title

Interleukin-13 damages intestinal mucosa via TWEAK and Fn14 in mice-a pathway associated with ulcerative colitis.

Sample Metadata Fields

Specimen part, Treatment

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accession-icon GSE32316
FGFR1 target genes in brown adipose tissues
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
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Description

We aimed to identify genes that are regulated by FGFR1 in brown adipose tissues of adult male ob/ob mice by injecting 1 mg/kg anti-FGFR1 agonistic antibody.

Publication Title

Amelioration of type 2 diabetes by antibody-mediated activation of fibroblast growth factor receptor 1.

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE65472
Identification of IL-22 regulated genes in the ileum after infection with Toxoplasma gondii
  • organism-icon Mus musculus
  • sample-icon 9 Downloadable Samples
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Description

IL-22 acts on epithelial cells and has been shown to induce tissue protective and wound healing responses in these cells. But it has recently been decribed that IL-22 exacerbates ileatis after infection with T. gondii.

Publication Title

Interleukin-22 induces interleukin-18 expression from epithelial cells during intestinal infection.

Sample Metadata Fields

Specimen part, Time

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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